Got a bunch more progress done on the truck this weekend. Really only worked on it for a few hours saturday and I'll be travelling for work this week so hoping to have it wrapped up next weekend and ready to drive again.
Drivetrain is re-installed.
wiring harness re-routed and all the connectors are plugged in
Transmission, crawl box, and t-case oil is changed.
Shifters are re-installed in the cab
Cross-member is bolted back up
New slave cylinder is connected, clutch fluid is flushed and bled.
For anyone with the 6-speed, I'd highly recommend this upgrade over the stock setup, seems to be very good quality. Time will tell once I get some road time under my belt, but all the reviews I've read says this kit is superior to the OEM setup. I was also able to eliminate the clutch accumulator along with a bunch of unnecessary tubing going from the clutch reservoir to the slave cylinder (rubber hose and long bendy hard line) so it cleaned the engine bay up a bit back by the firewall.
Things that are left are:
re-connect driveshafts
re-connect exhaust
torque remaining crossmember and transmission mount bolts
re-install center console